Open-source Software
Source code distributed under GPL license.
PhenoRipper
PhenoRipper is an easy to use image analysis software package that enables rapid exploration and interpretation of microscopy data. http://www.phenoripper.org
SimuCell
SimCell is a framework to synthetically generate fluorescent microscopic images of cellular population. http://www.simucell.org
How to cite our software in publications
PhenoRipper
To cite PhenoRipper in your publication, use the following:
Satwik Rajaram, Benjamin Pavie, Lani F Wu & Steven J Altschuler, PhenoRipper: software for rapidly profiling microscopy images Nature Methods | Vol. 9 No. 7 | July 2012 | 635-637
SimuCell
To cite SimuCell in your publication, use the following:
Satwik Rajaram, Benjamin Pavie, Nicholas E F Hac , Lani F Wu & Steven J Altschuler, SimuCell: a flexible framework for creating synthetic microscopy images Nature Methods | Vol. 9 No. 7 | July 2012 | 634-635