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UT Southwestern Medical Center

The Altschuler & Wu Computational and Systems Biology Laboratory

Open-source Software

Source code distributed under GPL license.

PhenoRipper

PhenoRipper

PhenoRipper is an easy to use image analysis software package that enables rapid exploration and interpretation of microscopy data.
http://www.phenoripper.org


SimuCell

SimuCell

SimCell is a framework to synthetically generate fluorescent microscopic images of cellular population.
http://www.simucell.org

How to cite our software in publications

PhenoRipper

To cite PhenoRipper in your publication, use the following:

Satwik Rajaram, Benjamin Pavie, Lani F Wu & Steven J Altschuler,
PhenoRipper: software for rapidly profiling microscopy images
Nature Methods | Vol. 9 No. 7 | July 2012 | 635-637

SimuCell

To cite SimuCell in your publication, use the following:

Satwik Rajaram, Benjamin Pavie, Nicholas E F Hac , Lani F Wu & Steven J Altschuler,
SimuCell: a flexible framework for creating synthetic microscopy images
Nature Methods | Vol. 9 No. 7 | July 2012 | 634-635